2018

• Kirby, J. T. and Derakhti, M., 2018, “Short-crested wave breaking”, European Journal of Mechanics B/Fluids, in press, doi:10.1016/j.euromechflu.2017.11.001.
• Abdolali, A., Kadri, U., Parsons, W. and Kirby, J. T., 2018, “On the propagation of acoustic-gravity waves under elastic ice sheets”, Journal of Fluid Mechanics, 837, 640-656, doi:10.1017/jfm.2017.808, Cambridge Core Share access code 5A9FC1CA9902F823CDD1098A70442449.
• Shi, F., Malej, M., Smith, J. M. and Kirby, J. T., 2018, “Breaking of ship bores in a Boussinesq-type ship-wake model”, Coastal Engineering, 132, 1-12, doi:10.1016/j.coastaleng.2017.11.002.

2017

• Abdolali, A. and Kirby, J. T., 2017, “Role of compressibility on tsunami propagation”, Journal of Geophysical Research: Oceans, 122, 9780-9794, doi:10.1002/2017JC013054, Wiley content link.
• Kukulka, T., Jenkins, R. L., Kirby, J. T., Shi, F. and Scarborough, R. W., 2017, “Surface wave dynamics in Delaware Bay and its adjacent coastal shelf”, Journal of Geophysical Research: Oceans, 122, 8683–8706, doi:10.1002/2017JC013370.
• Kirby, J. T., 2017, “Recent advances in nearshore wave, circulation and sediment transport modeling”, Journal of Marine Research, 75, 263-300, doi:10.1357/002224017821836824.
• Wu, G., Li, H., Liang, B., Shi, F., Kirby, J. T. and Mieras, R., 2017, “Subgrid modeling of salt marsh hydrodynamics with effects of vegetation and vegetation zonation”, Earth Surface Processes and Landforms, 42, 1755-1768, doi:10.1002/esp.4121.
• Banihashemi, S., Kirby, J. T. and Dong, Z., 2017, “Approximation of wave action flux velocity in strongly sheared mean flows”, Ocean Modelling, 116, 33-47, doi:10.1016/j.ocemod.2017.06.002.
• Zhou, Z., Yu, X., Hsu, T.-J., Shi, F., Geyer, W. R. and Kirby, J. T., 2017, “On non-hydrostatic coastal model simulations of shear instabilities in a stratified shear flow at high Reynolds number”, Journal of Geophysical Research: Oceans, 122, 3081-3105, doi:10.1002/2016JC012334.
• Lynett, P. J., Gately, K., Wilson, R., Montoya, L., Arcas,D., Aytore, B., Bai, Y., Bricker, J. D., Castro, M. J., Cheung, K. F., David, C. G., Dogan, G. G., Escalante, C., González, F. I., González-Vida, J. M., Grilli, S. T., Heitmann, T. W., Horrillo, J., KânoÄŸlu, U., Kian, R., Kirby, J. T., Li, W., Macías, J., Nicolsky, D. J., Ortega, S., Pampell-Maniso, A., Park, Y. S., Roeber, V., Sharghivand, N., Shelby, M., Shi, F., Tehranirad, B., Tolkova, E., Thio, H. K., VelioÄŸlu, D., Yalçıner, A. C., Yamazaki, Y., Zaytsev, A., Zhang, Y. J., 2017, “Inter-model analysis of tsunami-induced coastal currents”, Ocean Modelling, 114, 14-32, doi:10.1016/j.ocemod.2017.04.003.
• Grilli, S. T., Shelby, M., Kimmoun, O., Dupont, G., Nicolsky, D., Ma, G., Kirby, J. T. and Shi, F., 2017, “Modeling coastal tsunami hazard from submarine mass failures: effect of slide rheology, experimental validation, and case studies off the US East Coast”, Natural Hazards, 86, 353-391, doi:10.1007/s11069-016-2692-3.
• Shi, F., Chickadel, C., Hsu, T.-J., Kirby, J. T., Farquharson, G. and Ma, G., 2017, “High-resolution non-hydrostatic modeling of frontal features in the mouth of the Columbia River”, Estuaries and Coasts, 40, 296-309, doi:10.1007/s12237-016-0132-y, and supplement .

2016

• Kirby, J. T., Shi, F., Nicolsky, D. and Misra, S., 2016, “The 27 April 1975 Kitimat, British Columbia submarine landslide tsunami: A comparison of modeling approaches”, Landslides, 13, 1421-1434, doi:10.1007/s10346-016-0682-x.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model. Part 2: Turbulence and mean circulation”, Ocean Modelling, 107, 139-150, doi:10.1016/j.ocemod.2016.09.011.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model. Part 1: Organized wave motions”, Ocean Modelling, 107, 125-138, doi:10.1016/j.ocemod.2016.09.001.
• Schnyder, J. S. D., Eberli, G. P., Kirby, J. T., Shi, F., Tehranirad, B., Mulder, T., Ducassou, E., Hebbeln, D. and Wintersteller, P., 2016, “Tsunamis caused by submarine slope failures along western Great Bahama Bank”, Scientific Reports (Nature), 6, 35925, doi:10.1038/srep35925.  Millero Prize, best student publication (2016), Rosenstiel School, University of Miami , (press release).
• Kirby, J. T., 2016, “Boussinesq models and their application to coastal processes across a wide range of scales”, Journal of Waterway, Port, Coastal and Ocean Engineering, 142(6), 03116005, doi:10.1061/(ASCE)WW.1943-5460.0000350.
• Prestininzi, P., Abdolali, A., Montessori, A., Kirby, J. T. and La Rocca, M., 2016, “Lattice Boltzmann approach for hydro-acoustic waves generated by tsunamigenic sea bottom displacement”, Ocean Modelling, 107, 14-20, doi:10.1016/j.ocemod.2016.09.012.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “NHWAVE: Consistent boundary conditions and turbulence modeling”, Ocean Modelling, 106, 121-130, doi:10.1016/j.ocemod.2016.09.002.
• Ma, G., Farahani, A. A., Kirby, J. T. and Shi, F., 2016, “Modeling wave-structure interactions by an immersed boundary method in a sigma-coordinate model”, Ocean Engineering, 125, 238-247, doi:10.1016/j.oceaneng.2016.08.027.
• Orzech, M., Shi, F., Veeramony, J., Bateman, S., Calantoni, J. and Kirby, J. T., 2016, “Incorporating floating surface objects into a fully dispersive surface wave model”, Ocean Modelling, 102, 14-26, doi:10.1016/j.ocemod.2016.04.007. 
• Derakhti, M. and Kirby, J. T., 2016, “Breaking-onset, energy and momentum flux in unsteady focused wave packets”, Journal of Fluid Mechanics, 790, 553-581, doi:10.1017/jfm.2016.17. 
• Wu, G., Shi, F., Kirby, J. T., Mieras, R., Liang, B., Li, H. and Shi, J., 2016, “A pre-storage, subgrid model for simulating flooding and draining processes in salt marshes”, Coastal Engineering, 108, 65-78, doi:10.1016/j.coastaleng.2015.11.008.

2015

• Shi, J., Shi, F., Kirby, J. T., Ma, G.. Wu, G., Tong, C. and Zheng, J., 2015, “Pressure decimation and interpolation (PDI) method for a baroclinic non-hydrostatic model”, Ocean Modelling, 96, 265-279, doi:10.1016/j.ocemod.2015.09.010
• Tehranirad, B., Harris, J. C., Grilli, A. R., Grilli, S. T., Abadie, S., Kirby, J. T. and Shi, F., 2015, “Far-field tsunami hazard on the western European and US east coast from a large scale flank collapse of the Cumbre Vieja volcano, La Palma”, Pure and Applied Geophysics, 172, 3589-3616, doi:10.1007/s00024-015-1135-5 
• Ma, G., Kirby, J. T., Hsu, T.-J. and Shi, F., 2015, “A two-layer granular landslide model for tsunami wave generation: Theory and computation”, Ocean Modelling, 93, 40-55, doi:10.1016/j.ocemod.2015.07.012 
• Choi, J., Kirby, J. T. and Yoon, S. B., 2015, “Boussinesq modeling of longshore currents in the Sandy Duck experiment under directional random wave conditions”, Coastal Engineering, 101, 17-34, doi:10.1016/j.coastaleng.2015.04.005 , and Reply to Discussion, 106, 4-6, doi:10.1016/j.coastaleng.2015.09.002 .
• Abdolali, A., Cecioni, C., Bellotti, G. and Kirby, J. T., 2015, “Hydro-acoustic and tsunami waves generated by the 2012 Haida Gwaii earthquake: modeling and in-situ measurements”, Journal of Geophysical Research: Oceans, 120, 958-971, doi:10.1002/2014JC010385 
• Grilli, S. T., O’Reilly, C., Harris, J. C., Tajalli Bakhsh, T., Tehranirad, B., Banihashemi, S., Kirby, J. T., Baxter, C. D. P., Eggeling, T., Ma, G. and Shi, F., 2015, “Modeling of SMF tsunami hazard along the upper U. S. East Coast: Detailed impact around Ocean City, MD”, Nat. Hazards, 76, 705-746, doi:10.1007/s11069-014-1522-8 
• Abdolali, A., Kirby, J. T. and Bellotti, G., 2015, “Depth-integrated equation for hydro-acoustic waves with bottom damping”, Journal of Fluid Mechanics, 766, R1, doi:10.1017/jfm.2015.37 
• Shi, F., Vittori, G. and Kirby, J. T., 2015, “Concurrent correction method for modeling morphological response to dredging an offshore sandpit”, Coastal Engineering, 97, 1-10, doi:10.1016/j.coastaleng.2014.12.008 

2014

• Derakhti, M. and Kirby, J. T., 2014, “Bubble entrainment and liquid-bubble interaction under unsteady breaking waves”, Journal of Fluid Mechanics, 761, 464-506, doi:10.1017/jfm.2014.637 
• Tappin, D. R., Grilli, S. T., Harris, J. C., Geller, R. J., Masterlark, T., Kirby, J. T., Shi, F., Ma, G., Thingbaijam, K. K. S. and Mai, P. M., 2014, “Did a submarine landslide contribute to the 2011 Tohoku tsunami?”, Marine Geology, 357, 344-361, doi:10.1016/j.margeo.2014.09.043 
• Chen, J.-L., Shi, F., Hsu, T. J. and Kirby, J. T., 2014, “NearCoM-TVD – a quasi-3D nearshore circulation and sediment transport model”, Coastal Engineering, 91, 200-212, doi:10.1016/j.coastaleng.2014.06.002

2013

• Ma, G., Kirby, J. T. and Shi, F., 2013, “Numerical simulation of tsunami waves generated by deformable submarine landslides”, Ocean Modelling, 69, 146-165, doi:10.1016/j.ocemod.2013.07.001.
• Ma, G., Kirby, J T., Su, S. F., Figlus, J. and Shi, F., 2013, “Numerical study of turbulence and wave damping induced by vegetation canopies”, Coastal Engineering, 80, 68-78, doi:10.1016/j.coastaleng.2013.05.007 
• Grilli, S. T., Harris, J. C., Tajalli Bakhsh, T., Masterlark, T. L., Kyriakopoulus, C., Kirby, J. T. and Shi, F., 2013, “Numerical simulation of the 2011 Tohoku tsunami based on a new transient FEM co-seismic source: Comparison to far- and near-field observation”, Pure and Applied Geophysics, 170, 1333-1359,  doi:10.1007/s00024-012-0528-y .
• Sawyer, A. H., Shi, F., Kirby, J. T. and Michael, H. A., 2013, “Dynamic response of surface water-groundwater exchange to currents, tides and waves in a shallow estuary”, Journal of Geophysical Research – Oceans, 118, 1749-1758, doi:10.1002/jgrc.20154
• Shi, F., Cai, F., Kirby, J. T. and Zheng, J., 2013, “Morphological modeling of a nourished bayside beach with a low tide terrace”, Coastal Engineering, 78, 23-34, doi:10.1016/j.coastaleng.2013.03.005.
• Geiman, J. D. and Kirby, J. T., 2013, “Unforced oscillation of rip-current vortex cells”, Journal of Physical Oceanography, 43, 477-497, doi:10.1175/JPO-D-11-0164.1.
• Kirby, J. T., Shi, F., Tehranirad, B., Harris, J. C. and Grilli, S. T., 2013, “Dispersive tsunami waves in the ocean: model equations and sensitivity to dispersion and Coriolis effects”, Ocean Modelling, 62, 39-55, doi:10.1016/j.ocemod.2012.11.009, Certificate for Highly Cited Research .

2012

• Karjadi, E., Badiey, M., Kirby, J. T. and Bayindir, C., 2012, “The effects of surface gravity waves on high frequency acoustic propagation in shallow water”, IEEE Journal of Oceanic Engineering, 37, 112-121, doi:10.1109/JOE.2011.2168670
• Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D. and Grilli, S. T., 2012, “A high-order adaptive time-stepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation”, Ocean Modelling, 43-44, 36-51.doi:10.1016/j.ocemod.2011.12.004
• Ma, G., Shi, F. and Kirby, J. T., 2012, “Shock-capturing non-hydrostatic model for fully dispersive surface wave processes”, Ocean Modelling, 43-44, 22-35, doi:10.1016/j.ocemod.2011.12.002

2011

• Hampson, R., MacMahan, J. and Kirby, J. T., 2011, “A low-cost hydrographic kayak surveying system”, Journal of Coastal Research, 27, 600-603, doi:10.2112/JCOASTRES-D-09-00108.
• Ma, G., Shi, F. and Kirby, J. T., 2011, “A polydisperse two-fluid model for surf zone bubble simulation”, Journal of Geophysical Research, 116, C05010, doi:10.1029/2010JC006667 
• Shi, F., Hanes, D. M., Kirby, J. T., Erikson, L., Barnard, P. and Eshleman, J., 2011, “Pressure gradient-dominated nearshore circulation on a beach influenced by an adjacent large inlet”, Journal of Geophysical Research, 116, C04020, doi:10.1029/2010JC006788.
• Geiman, J. D., Kirby, J. T., Reniers, A. J. H. M. and MacMahan, J. H., 2011, “Effects of wave-averaging on estimates of fluid mixing in the surfzone”, Journal of Geophysical Research, 116, C04006, doi:10.1029/2010JC006678.

2010

• Grilli, S. T., Dubosq, S., Pophet, N., Perignon, Y., Kirby, J. T. and Shi, F., 2010, “Numerical simulation of co-seismic tsunami impact on the North Shore of Puerto Rico and far-field impact on the US East Coast: a first-order hazard analysis”, Natural Hazards and Earth Systems Science, 10, 2109-2125, doi:10.5194/nhess-10-2109-2010.
• Shi, F., Kirby, J. T. and Ma, G., 2010, “Modeling quiescent phase transport of air bubbles induced by breaking waves”, Ocean Modelling, 35, 105-117, doi:10.1016/j.ocemod.2010.07.002.
• Zhang, W.-Z., Shi, F., Hong, H.-S., Shang, S.-P., Kirby, J. T., 2010, “Tide-surge interaction intensified by the Taiwan Strait”, Journal of Geophysical Research, 115, C06012, doi:10.1029/2009JC005762.
• Debsarma, S., Das, K. P. and Kirby, J. T., 2010, “Fully nonlinear higher order model equations for long internal waves in a two fluid system”, Journal of Fluid Mechanics, 645, 281-303, doi:10.1017/S0022112010000601.

2009

• Waythomas, C. F., Watts, P., Shi, F. and Kirby, J. T., 2009, “Pacific basin tsunami hazards associate with mass flows in the Aleutian Arc of Alaska”, Quaternary Science Reviews, 28, 1006-1019, doi:10.1016/j.quascirev.2009.02.019

2008

• Terrile, E., Brocchini, M., Christensen, K. H. and Kirby, J. T., 2008, “Dispersive effects on wave-current interaction and vorticity transport in nearshore flows”, Physics of Fluids, 20, 036602, doi:10.1063/1.288973
• Misra, S. K., Kirby, J. T., Brocchini, M., Veron, F., Thomas, M. and Kambhamettu, C., 2008, “The mean and turbulent flow structure of a weak hydraulic jump Physics of Fluids, 20, 035106, doi:10.1063/1.2856269
• Long, W., Kirby, J. T. and Shao, Z., 2008, “A numerical scheme for morphological bed level calculations”, Coastal Engineering, 55, 167-180,  doi:10.1016/j.coastaleng.2007.09.009.

2007

• Shi, F., Kirby, J. T. and Hanes, D. M., 2007, “An efficient mode-splitting method for a curvilinear nearshore circulation model”, Coastal Engineering, 54, 811-824, doi:10.1016/j.coastaleng.2007.05.009.
• Grilli, S. T., Ioualalen, M., Asavanant, J., Shi, F., Kirby, J. T. and Watts, P., 2007, “Source constraints and model simulation of the December 26, 2004 Indian Ocean tsunami”, Journal of Waterway, Port, Coastal and Ocean Engineering, 133, 414-428, doi:10.1061/(ASCE)0733-950X(2007)133:6(414).
• Ioualalen, M., J. A. Asavanant, N. Kaewbanjak, N., Grilli, S. T., Kirby, J. T. and Watts, P., 2007, “Modeling of the 26th December 2004 Indian Ocean tsunami: Case study of impact in Thailand”, Journal of Geophysical Research, 112, C07024, doi:10.1029/2006JC003850.
• Kaihatu, J. M., Veeramony, J., Edwards, K. L. and Kirby, J. T., 2007, “Asymptotic behavior of frequency and wavenumber spectra of nearshore shoaling and breaking waves”, Journal of Geophysical Research, 112, C06016, doi:10.1029/2006JC003817

2006

• Terrile, E., Briganti, R., Brocchini, M. and Kirby, J. T., 2006, “Topographically-induced enstrophy production/dissipation in coastal models”, Physics of Fluids, 18(12), 126603, doi:10.1063/1.2400076
• Misra, S. K., Thomas, M., Kambhamettu, C., Kirby, J. T., Veron, F. and Brocchini, M., 2006, “Estimation of complex air-water interfaces from PIV images”, Experiments in Fluids, 40, 764-775, doi:10.1007/s00348-006-0113-1

2005

• Shi, F. and Kirby, J. T., 2005, “Curvilinear parabolic approximation for surface wave transformation with wave-current interaction”, Journal of Computational Physics, 204, 562-586.
  (pdf)
• Thomas, M., Misra, S., Kambhamettu, C. and Kirby, J. T., 2005, “A robust motion estimation algorithm for PIV”, Measurement Science and Technology, 16, 865-877, (pdf)
• Day, S. J., Watts, P., Grilli, S. T. and Kirby, J. T., 2005, “Mechanical models of the 1975 Kalapana, Hawaii earthquake and tsunami”, Marine Geology, 215, 59-92, doi:10.1016/j.margeo.2004.11.008

2003

• Chen, Q., Kirby, J. T., Dalrymple, R. A., Shi, F. and Thornton, E. B., 2003, “Boussinesq modeling of longshore currents”, Journal of Geophysical Research, 108(C11), 3362, doi:10.1029/2002JC001308 
• Watts, P., Grilli, S. T., Kirby, J. T., Fryer, G. J. and Tappin, D. R., 2003, “Landslide tsunami case studies using a Boussinesq model and a fully nonlinear tsunami generation model”, Natural Hazards and Earth System Sciences,3, 391-402, doi:10.5194/nhess-3-391-2003
• Shi, F., Svendsen, I. A., Kirby, J. T. and Smith, J. M., 2003, “A curvilinear version of a quasi-3D nearshore circulation model”, Coastal Engineering, 49, 99-124, doi:10.1016/S0378-3839(03)00049-8.
• Kennedy, A.B., and Kirby, J.T., 2003, “An unsteady wave driver for narrow-banded waves: modeling nearshore circulation driven by wave groups”, Coastal Engineering, 48, 257-275, doi:10.1016/S0378-3839(03)00031-0
• Shi, F., Kirby, J. T., Dalrymple, R. A. and Chen, Q., 2003, “Wave simulations in Ponce de Leon Inlet using a Boussinesq model”, Journal of Waterway, Port, Coastal and Ocean Engineering, 129, 124-135, doi:10.1061/(ASCE)0733-950X(2003)129:3(124)
• Misra, S. K., Kennedy, A. B. and Kirby, J. T., 2003, “An approach to determining nearshore bathymetry using remotely sensed ocean surface dynamics”, Coastal Engineering, 47, 265-293, doi:10.1016/S0378-3839(02)00118-7

2002

• Chawla, A. and Kirby, J. T., 2002, “Monochromatic and random wave breaking at blocking points”, Journal of Geophysical Research, 107(C7), doi:10.1029/2001JC001042
• Kennedy, A. B., Kirby, J. T. and Gobbi, M. F., 2002, “Simplified higher order Boussinesq equations. 1: Linear considerations”, Coastal Engineering, 44, 205-229, doi:10.1016/S0378-3839(01)00032-1.

2001

• Shi, F., Dalrymple, R. A., Kirby, J. T., Chen, Q. and Kennedy, A., 2001, “A fully nonlinear Boussinesq model in generalized curvilinear coordinates”, Coastal Engineering, 42, 337-358, doi:10.1016/S0378-3839(00)00067-3.
• Kennedy, A. B., Kirby, J. T., Chen, Q. and Dalrymple, R. A., 2001, “Boussinesq-type equations with improved nonlinear behaviour”, Wave Motion, 33, 225-243, (pdf)

2000

• Svendsen, I. A., Veeramony, J., Bakunin, J. and Kirby, J. T., 2000, “The flow in weak turbulent hydraulic jumps”, Journal of Fluid Mechanics, 418, 25-57, doi:10.1017/S0022112000008867.
• Kennedy, A. B., Dalrymple, R. A., Kirby, J. T. and Chen, Q., 2000, “Determination of inverse depths using direct Boussinesq modelling”, Journal of Waterway, Port, Coastal and Ocean Engineering, 126, 206-214, doi: 10.1061/(ASCE)0733-950X(2000)126:4(206) .
• Chawla, A. and Kirby, J. T., 2000, “A source function method for generation of waves on currents in Boussinesq models”, Applied Ocean Research, 22, 75-83, doi:10.1016/S0141-1187(00)00005-5
• Gobbi, M. F., Kirby, J. T. and Wei, G., 2000, “A fully nonlinear Boussinesq model for surface waves. II. Extension to O(kh^4)”, Journal of Fluid Mechanics, 405, 181-210, doi:10.1017/S0022112099007247.
• Chen, Q., Kirby, J. T., Dalrymple, R. A., Kennedy, A. B. and Chawla, A., 2000, “Boussinesq modeling of wave transformation, breaking and runup. II: Two horizontal dimensions”, Journal of Waterway, Port, Coastal and Ocean Engineering, 126, 48-56, doi:10.1061/(ASCE)0733-950X(2000)126:1(48) .
• Kennedy, A. B, Chen, Q., Kirby, J. T., and Dalrymple, R. A., 2000, “Boussinesq modeling of wave transformation, breaking and runup. I: One dimension”, Journal of Waterway, Port, Coastal and Ocean Engineering, 126, 39-47, doi:10.1061/(ASCE)0733-950X(2000)126:1(39) .

1999

• Ozkan-Haller, H. T. and Kirby, J. T., 1999, “Nonlinear evolution of shear instabilities of the longshore current: A comparison of observations and computations”, Journal of Geophysical Research, 104, 25,953 – 25,984, (pdf)
• Chen, Q., Dalrymple, R. A., Kirby, J. T., Kennedy, A. and Haller, M. C., 1999, “Boussinesq modeling of a rip current system”, Journal of Geophysical Research, 104, 20,617 -20,637, (pdf)
• Gobbi, M. F. and Kirby, J. T., 1999, “Wave evolution over submerged sills: Tests of a high-order Boussinesq model”, Coastal Engineering, 37, 57-96, doi:10.1016/S0378-3839(99)00015-0, and erratum, 40, 277, 2000, doi:10.1016/S0378-3839(00)00022-3.
• Wei, G., Kirby, J. T. and Sinha, A., 1999, “Generation of waves in Boussinesq models using a source function method”, Coastal Engineering, 36, 271-299, doi:10.1016/S0378-3839(99)00009-5.

1998

• Chawla, A., Ozkan-Haller, H. T. and Kirby, J. T., 1998, “Spectral model for wave transformation over irregular bathymetry”, Journal of Waterway, Port, Coastal and Ocean Engineering, 124, 189-198, doi:10.1061/(ASCE)0733-950X(1998)124:4(189).
• Kaihatu, J. M. and Kirby, J. T., 1998, “Two-dimensional parabolic modeling of extended Boussinesq equations”, Journal of Waterway, Port, Coastal and Ocean Engineering, 124, 57-67, doi:10.1061/(ASCE)0733-950X(1998)124:2(57).

1997

• Ozkan-Haller, H. T. and Kirby, J. T., 1997, “A Fourier-Chebyshev collocation method for the shallow water equations including shoreline runup”, Applied Ocean Research., 19, 21-34, doi:10.1016/S0141-1187(97)00011-4

1996

• Chajes, M. J., Zhang, L. and Kirby, J. T., 1996, “Dynamic analysis of tall building using reduced-order continuum model”, Journal of Structural Engineering, 122, 1284-1291, (pdf)
• Chajes, M. J., Finch, W. W. and Kirby, J. T., 1996, “Dynamic analysis of a 10-story reinforced concrete building using a continuum model”, Computers and Structures, 58, 487-498, (pdf)
• Walker, C. A., Kirby, J. T. and Dentel, S. K., 1996, “The streaming current detector: a quantitative model”, Journal of Colloid and Interface Science, 182, 71-81, (pdf)
• Ting, F. C. K. and Kirby, J. T., 1996, “Dynamics of surf-zone turbulence in a spilling breaker”, Coastal Engineering, 27, 131-160, doi:10.1016/0378-3839(95)00037-2.

1995

• Wei, G. and Kirby, J. T., 1995, “A time-dependent numerical code for extended Boussinesq equations”, Journal of Waterway, Port, Coastal and Ocean Engineering, 121, 251-261, doi:10.1061/(ASCE)0733-950X(1995)121:5(251).
• Kaihatu, J. M. and Kirby, J. T., 1995, “Nonlinear transformation of waves in finite water depth”, Physics of Fluids, 7,, 1903-1914, (pdf)
• Wei, G., Kirby, J. T., Grilli, S. T. and Subramanya, R., 1995, “A fully nonlinear Boussinesq model for surface waves. I. Highly nonlinear, unsteady waves”, Journal of Fluid Mechanics, 294, 71-92, doi:10.1017/S0022112095002813.
• Ting, F. C.-K. and Kirby, J. T., 1995, “Dynamics of surf-zone turbulence in a strong plunging breaker”, Coastal Engineering, 24, 177-204, doi:10.1016/0378-3839(94)00036-W.

1994

• Lee, C. H. and Kirby. J. T., 1994, “Analytical comparison of time-dependent mild-slope equations”, Journal of the Korean Society of Coastal and Ocean Engineers, 6, 389-396.
• Dalrymple, R. A., Kirby, J. T. and Martin, P. A., 1994, “Spectral methods for forward-propagating water waves in conformally-mapped channels”, Applied Ocean Research, 16, 249-266, doi:10.1016/S0141-1187(94)90015-9.
• Ting, F. C. K. and Kirby, J. T., 1994, “Observations of undertow and turbulence in a laboratory surfzone”, Coastal Engineering, 24, 51-80, doi:10.1016/0378-3839(94)90026-4
• Kirby, J. T., Dalrymple, R. A. and Kaku, H., 1994, “Parabolic approximations for water waves in conformal coordinate systems”, Coastal Engineering, 23, 185-213, doi:10.1016/0378-3839(94)90001-9

1993

• Mase, H. and Kirby, J. T., 1993, “Hybrid model for nonlinear transformation of random waves”, Trans. Jap. Soc. Civ. Engrs., No. 479-25, 91-100. (in Japanese)
• Kirby, J.T. and Lee, C., 1993, “Short waves in a rotating, shallow tank with bathymetry: a model equation in the mild-slope approximation”, SIAM J. Appl. Math., 53, 1381-1400, (pdf)
• Kirby, J. T., 1993, “A note on Bragg scattering of surface waves by sinusoidal bars”, Physics of Fluids A, 5, 380-386, (pdf)

1992

• Dalrymple, R. A. and Kirby, J. T., 1992, “Angular spectrum modelling of water waves”, CRC Reviews in Aquatic Sciences, 6, 383-404.
• Bailard, J. A., DeVries, J. W. and Kirby, J. T., 1992, “Considerations in using Bragg reflection for storm erosion protection”, J. Waterway, Port, Coastal and Ocean Engrng., 118, 62-74, doi:10.1061/(ASCE)0733-950X(1992)118:1(62).

1991

• Kirby, J. T., 1991, “Intercomparison of truncated series solutions for shallow water waves”, Journal of Waterway, Port, Coastal and Ocean Engineering, 117, 143-155, doi:10.1061/(ASCE)0733-950X(1991)117:2(143).

1990

• Suh, K. D., Dalrymple, R. A. and Kirby, J. T., 1990, “An angular spectrum model for propagation of Stokes waves”, Journal of Fluid Mechanics, 221, 205-232, doi:10.1017/S0022112090003548.
• Dalrymple, R. A., Munasinghe, L. C., Wood, D. H. and Kirby, J. T., 1990, “A very wide angle acoustic model for underwater sound propagation”, Journal of the Acoustical Society of America, 88, 1863-1876, (pdf)

1989

• Kirby, J. T., 1989, “Propagation of surface waves over an undulating bed”, Physics of Fluids A, 1, 1898-1899, (pdf)
• Kirby, J. T., 1989, “A note on parabolic radiation boundary conditions for elliptic wave calculations”, Coastal Engineering, 13, 211-218, (pdf)
• Dalrymple, R. A., Suh, K., Kirby, J. T. and Chae, J. W., 1989, “Models for very wide-angle water waves and wave diffraction. Part 2. Irregular bathymetry”, Journal of Fluid Mechanics, 201, 299-322, doi:10.1017/S0022112089000959.
• Kirby, J. T. and Chen, T-M., 1989, “Surface waves on vertically sheared flows: approximate dispersion relations”, Journal of Geophysical Research, 94, 1013-1027, (pdf)

1988

• Kirby, J. T., 1988, “Parabolic wave computations in non-orthogonal coordinate systems”, Journal of Waterway, Port, Coastal and Ocean Engineering, 114, 673-685, doi:10.1061/(ASCE)0733-950X(1988)114:6(673).
• Kirby, J. T. and Vengayil, P., 1988, “Non-resonant and resonant reflection of long waves in varying channels”, Journal of Geophysical Research, 93, 10782-10796, (pdf)
• Dalrymple, R. A. and Kirby, J. T., 1988, “Models for very wide-angle water waves and wave diffraction”, Journal of Fluid Mechanics, 192, 33-50, doi:10.1017/S0022112088001776.
• Kirby, J. T., 1988, “Current effects on resonant reflection of surface water waves by sand bars”, Journal of Fluid Mechanics, 186, 501-520, doi:10.1017/S0022112088000242.

1987

• Kirby, J. T., Dalrymple, R. A. and Seo, S. N., 1987, “Propagation of obliquely incident water waves over a trench 2. Currents flowing along the trench”, Journal of Fluid Mechanics, 176, 95-116, doi:10.1017/S0022112087000582.

1986

• Kirby, J. T., 1986, “Rational approximations in the parabolic equation method for water waves”, Coastal Engineering, 10, 355-378, doi:10.1016/0378-3839(86)90021-9
• Kirby, J. T., 1986, “Open boundary condition in the parabolic equation method”, Journal of Waterway, Port, Coastal and Ocean Engineering, 112, 460-465, doi:10.1061/(ASCE)0733-950X(1986)112:3(460)
• Kirby, J. T. and Dalrymple, R. A., 1986, “An approximate model for dispersion in monochromatic wave propagation models”, Coastal Engineering, 9, 545-561, 1986, doi:10.1016/0378-3839(86)90003-7 and reply to discussions, 11, 87-92, 1987,  doi:10.1016/0378-3839(87)90041-X
• Dalrymple, R. A. and Kirby, J. T., 1986, “Water waves over ripples”, Journal of Waterway, Port, Coastal and Ocean Engineering, 112, 309-319, doi:10.1061/(ASCE)0733-950X(1986)112:2(309).
• Kirby, J. T., 1986, “Higher-order approximations in the parabolic equation method for water waves”, Journal of Geophysical Research, 91, 933-952, (pdf)
• Kirby, J. T. and Dalrymple, R. A., 1986, “Modelling waves in surfzones and around islands”, Journal of Waterway, Port, Coastal and Ocean Engineering, 112, 78-93, doi:10.1061/(ASCE)0733-950X(1986)112:1(78).
• Kirby, J. T., 1986, “On the gradual reflection of weakly-nonlinear Stokes waves in regions with varying topography”, Journal of Fluid Mechanics, 162, 187-209, doi:10.1017/S0022112086002008.
• Kirby, J.T., 1986, “A general wave equation for waves over rippled beds”, Journal of Fluid Mechanics, 162, 171-186, doi:10.1017/S0022112086001994.

1985

• Liu, P.L.-F., Yoon, S.B. and Kirby, J.T., 1985, “Nonlinear refraction-diffraction of waves in shallow water”, Journal of Fluid Mechanics, 153, 184-201, doi:10.1017/S0022112085001203.

1984

• Kirby, J.T. and Dalrymple, R.A., 1984, “Verification of a parabolic equation for propagation of weakly-nonlinear waves”, Coastal Engineering, 8, 219-232, doi:10.1016/0378-3839(84)90002-4
• Dalrymple, R.A., Kirby, J.T. and Hwang, P.A., 1984, “Wave diffraction due to areas of energy dissipation”, Journal of Waterway, Port, Coastal and Ocean Engineering, 110, 67-79, doi:10.1061/(ASCE)0733-950X(1984)110:1(67).
• Kirby, J.T., 1984, “A note on linear surface wave-current interaction over slowly varying topography”, Journal of Geophysical Research, 89, 745-747, (pdf)

1983

• Kirby, J.T. and Dalrymple, R.A., 1983, “A parabolic equation for the combined refraction-diffraction of Stokes waves by mildly-varying topography”, Journal of Fluid Mechanics, 136, 453-466, doi:10.1017/S0022112083002232.
• Kirby, J.T. and Dalrymple, R.A., 1983, “Oblique envelope solutions of the Davey-Stewartson equations in intermediate water depth”, Physics of Fluids, 26, 2916-2918
• Kirby, J.T. and Dalrymple, R.A., 1983, “Propagation of obliquely incident water waves over a submerged trench”, Journal of Fluid Mechanics, 133, 47-63, doi:10.1017/S0022112083001780.

1981

• Kirby, J.T., Dalrymple, R.A. and Liu, P.L.-F., 1981, “Modification of edge waves by barred-beach topography”, Coastal Engineering, 5, 35-49, doi:10.1016/0378-3839(81)90003-X

2017

• Doelp, M.,J.A. Puleo, P. Cowan, M. Arford-Granholm. Accepted. Characterizing surf zone injuries from the five most populated beaches on the Atlantic-fronting Delaware coast,American Journal of Emergency Medicine (
  https://doi.org/10.1016/j.ajem.2017.12.053)
• Torres-Freyermuth, A., J. A. Puleo, N. DiCosmo, M.E. Allende-Arandia, P. Chardon-Maldonado, J. Lopez, B. Figueroa-Espinoza, A. Ruiz de Alegria Arzaburu, J. Figlus, T. M. Roberts and J. Candela. 2017. Nearshore circulation on a sea breeze dominated beach during intense wind events, Continental Shelf Research, 151, 40-52 (https://doi.org/10.1016/j.csr.2017.10.008).
• Puleo, J.A., D. Krafft, J.C. Pintado-Patiño, and B. Bruder. 2017. Video-derived near bed and sheet flow sediment particle velocities in dam-break-driven swash, Coastal Engineering, 126, 27-36 (https://doi.org/10.1016/j.coastaleng.2017.04.008)
• Martins, K., C. E. Blenkinsopp, H. E. Power, B. Bruder, J. A. Puleo, and E. W. J. Bergsma. 2017. High-resolution monitoring of wave transformation in the surf zone using a LiDAR scanner array, Coastal Engineering, 128, 37-43 (https://doi.org/10.1016/j.coastaleng.2017.07.007)
• Anderson, D., D.T. Cox, R. Mieras, J.A. Puleo and T-J. Hsu. 2017. Observations of wave-induced pore pressure gradients and bed level response on a surf zone sandbar, Journal of Geophysical Research, 122, 5169-5193, 10.1002/2016JC012557 (http://onlinelibrary.wiley.com/doi/10.1002/2016JC012557/epdf).
• Kim, Y., Z. Zhou, Hsu, T-J. and J.A. Puleo. 2017. Large eddy simulation of dam-break driven swash on a rough planar beach, Journal of Geophysical Research, 10.1002/2016JC012366 (http://onlinelibrary.wiley.com/doi/10.1002/2016JC012366/epdf).
• Pieterse, A., J.A. Puleo, T.E. McKenna and J. Figlus. 2017. In situ measurements of shear stress, erosion and deposition in man-made tidal channels within a tidal saltmarsh. Estuarine, Coastal and Shelf Science, 192, 29-41 (https://doi.org/10.1016/j.ecss.2017.04.028)
• Mieras, R., J.A. Puleo, D. Anderson, D.T. Cox and T.J. Hsu. 2017. Large-scale experimental observations of sheet flow on a sandbar under skewed-asymmetric waves, Journal of Geophysical Research, 122, 5022-5045, 10.1002/2016JC012438 (http://onlinelibrary.wiley.com/doi/10.1002/2016JC012438/epdf).

2016

• Pieterse, A., J.A. Puleo and T.E. McKenna. 2016. Hydrodynamics and sediment suspension in shallow tidal channels intersecting a tidal flat, Continental Shelf Research, 119, 40-55 (https://doi.org/10.1016/j.csr.2016.03.012).
• Ruju, A. D. Conley, G. Masselink, M. Austin and J.A. Puleo. 2016, Sediment transport dynamics in the swash zone under large-scale laboratory conditions, Continental Shelf Research, 10.1016/j.csr.2016.03.015 (https://doi.org/10.1016/j.csr.2016.03.015).

2015

• Chardon-Maldonado, P., J.C. Pintado-Patino and J.A. Puleo. 2015. Advances in swash zone research: Small-scale hydrodynamics and sediment transport processes. Coastal Engineering, doi:10.1016/j.coastaleng.2015.10.008 (https://doi.org/10.1016/j.coastaleng.2015.10.008).
• Puleo, J.A. and A. Torres-Freyermuth. 2015. The second international workshop on swash-zone processes, Coastal Engineering, doi:10.1016/j.coastaleng.2015.09.007 (https://doi.org/10.1016/j.coastaleng.2015.09.007).
• Masselink, G., A. Ruju, D. Conley, I. Turner, G. Ruessink, A. Matias, C. Thompson, B. Castelle, G. Wolters, J.A. Puleo and V. Citerone. 2015. Large-scale barrier dynamics experiment II (BARDEX II): Experimental design, instrumentation, test programme and data set, Coastal Engineering, doi:10.1016/j.coastaleng.2015.07.009 (https://doi.org/10.1016/j.coastaleng.2015.07.009).
• Ruju, A., D. Conley, G. Masselink, M. Austin, J.A. Puleo, T. Lanckriet and D. Foster. 2015. Boundary layer dynamics in the swash zone under large-scale laboratory conditions, Coastal Engineering, doi:10.1016/j.coastaleng.2015.08.001 (https://doi.org/10.1016/j.coastaleng.2015.08.001).
• Puleo, J.A., K. Hutschenreuter, P. Cowan, W. Carey, M. Arford-Granholm, K. K. McKenna. 2015. Delaware surf zone injuries and associated environmental conditions, Natural Hazards, 81(2), 845-867, doi:10.1007/s11069-015-2108-9 (https://link.springer.com/article/10.1007/s11069-015-2108-9).
• Heiss, J.W., J.A. Puleo, W.J. Ullman and H.A. Michael. 2015. Coupled surface-subsurface hydrologic measurements reveal recharge and discharge dynamics across the swash zone of a sandy beach, Water Resources Research, 10.1002/2015WR017395 (http://onlinelibrary.wiley.com/doi/10.1002/2015WR017395/epdf).
• Pintado-Patino, J.C., A. Torres-Freyermuth, J.A. Puleo and D. Pokrajac. 2015. On the role of infiltration and exfiltration in swash zone boundary layer dynamics in the swash zone, Journal of Geophysical Research, 10.1002/2015JC010806 (http://onlinelibrary.wiley.com/doi/10.1002/2015JC010806/epdf).
• Ruessink, B. G., C. Blenkinsopp, J. Brinkkemper, B. Castelle, B. Dubarbier, F. Grasso, J. A. Puleo, T. Lanckriet and G. Masselink. 2015. Sandbar and beach-face evolution on a prototype coarse sandy barrier, Coastal Engineering, doi:10.1016/j.coastaleng.2015.11.005 (https://doi.org/10.1016/j.coastaleng.2015.11.005).
• Pieterse, A., J.A. Puleo and T.E. McKenna. 2015. Near-bed shear stress, turbulence production and dissipation in a shallow and narrow tidal channel, Earth Surface Processes and Landforms, 40(15), 2059-2070, doi: 10.1002/esp.3782 (http://onlinelibrary.wiley.com/doi/10.1002/esp.3782/epdf).
• Brinkemper, J.A. T. Lanckriet, F. Grasso, J.A. Puleo and B.G. Ruessink. 2015. Observations of turbulence within the surf and swash zone of a field-scale sandy laboratory beach, Coastal Engineering, doi:10.1016/j.coastaleng.2015.07.006 (https://doi.org/10.1016/j.coastaleng.2015.07.006).
• Puleo, J.A., T. Lanckriet, D. Conley and D. Foster. 2015. Sediment transport partitioning in the swash zone of a large-scale laboratory beach, Coastal Engineering, doi:10.1016/j.coastaleng.2015.11.001 (https://doi.org/10.1016/j.coastaleng.2015.11.001).
• Lanckriet, T. and J.A. Puleo. 2015. A semianalytical model for sheet flow layer thickness with application to the swash zone, Journal of Geophysical Research, 120 (2), 1333-1352 (http://onlinelibrary.wiley.com/doi/10.1002/2014JC010378/epdf).
• Puleo, J.A. A. Pieterse and T.E. McKenna. 2015. Quantifying tidal mud flat elevations from fixed-platform long-wave infrared imagery, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing, 8 (3), 199-1207 (http://ieeexplore.ieee.org/document/7008498/?reload=true).
• Inch, K., G. Masselink, J.A. Puleo, P. Russell and D. Conley. 2015. Vertical structure of near-bed cross-shore flow velocities in the swash zone of a dissipative beach, Continental Shelf Research, dx.doi.org/10.1016/j.csr.2015.04.006 (https://doi.org/10.1016/j.csr.2015.04.006).
• Keshtpoor, M., J.A. Puleo, F. Shi and G. Ma. 2015. 3D numerical simulation of turbulence and sediment transport within a tidal inlet, Coastal Engineering, 96, 13-26 (https://doi.org/10.1016/j.coastaleng.2014.10.009).

2014

• Keshtpoor, M., J.A. Puleo and F. Shi. 2014. Downdrift beach erosion adjacent to Indian River Inlet, Delaware, USA. Shore & Beach, 82(1), 31-41 (Best student paper award at ASBPA conference).
• Keshtpoor, M., J.A. Puleo, F. Shi and N. DiCosmo. 2014. Numerical simulation of nearshore hydrodynamics and sediment transport downdrift of a tidal inlet, Journal of Waterway, Port, Coastal and Ocean Engineering, 10.1061/(ASCE)WW.1943-5460.0000273, 04014035 (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%29WW.1943-5460.0000273).
• Puleo, J.A., T. Lanckriet and C. Blenkinsopp. 2014. Bed level fluctuations in the inner surf and swash zone of a dissipative beach, Marine Geology, 349, 99-112 (https://doi.org/10.1016/j.margeo.2014.01.006).
• Puleo, J.A., C. Blenkinsopp, D. Conley, G. Masselink, I.L. Turner, P. Russell, D. Buscombe, D. Howe, T. Lanckriet, R. McCall and T. Poate. 2014.  Comprehensive field study of swash-zone processes, Part 1: Experimental design with examples of hydrodynamic and sediment transport measurements, Journal of Waterway, Port, Coastal and Ocean Engineering, 10.1061/(ASCE)WW.1943-5460.0000210, INVITED, (https://ascelibrary.org/doi/full/10.1061/%28ASCE%29WW.1943-5460.0000210).
• Lanckriet, T., J.A. Puleo, G. Masselink, I.L. Turner, D. Conley, C. Blenkinsopp and P. Russell. 2014. Comprehensive field study of swash-zone processes, Part 2: Sheet flow sediment concentrations during quasi-steady backwash, Journal of Waterway, Port, Coastal and Ocean Engineering, 10.1061/(ASCE)WW.1943-5460.0000209, INVITED, (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%29WW.1943-5460.0000209).

2013

• Turner, I.L., G.C. Rau, M.S. Andersen, M.J. Austin, J.A. Puleo and G. Masselink. 2013. Coastal sand barrier hydrology – observations from the BARDEX II prototype-scale laboratory experiment, Journal of Coastal Research, SI65, 1886-1891 (http://www.jcronline.org/doi/abs/10.2112/SI65-319.1?code=cerf-site).
• Lanckriet, T. and J.A. Puleo. 2013. Near-bed turbulence dissipation measurements in the inner surf and swash zone, Journal of Geophysical Research, 118 (12), 6634-6647 (http://onlinelibrary.wiley.com/doi/10.1002/2013JC009251/epdf).
• Roberts, T.M., P. Wang and J.A. Puleo. 2013. Storm-driven cyclic beach morphodynamics of a mixed sand and gravel beach along the mid-Atlantic coast USA, Marine Geology, 346, 403-421, (https://doi.org/10.1016/j.margeo.2013.08.001).
• Lanckriet, T. J.A. Puleo, and N. Waite. 2013. A conductivity concentration profiler for sheet flow sediment transport, IEEE Journal of Oceanic Engineering, 38, 55-70, (http://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6363485).
• Keshtpoor, M. J.A. Puleo, J. Gebert and N.G. Plant. 2013. Beach response to a sand bypassing system, Coastal Engineering, 73, 28-42, (https://doi.org/10.1016/j.coastaleng.2012.09.006).
• Torres-Freyermuth, A., J. A. Puleo and D. Pokrajac. 2013. Modeling swash-zone hydrodynamics and shear stresses on planar slopes using Reynolds-Averaged Navier–Stokes equations, Journal of Geophysical Research, 118, doi:10.1002/jgrc.20074, (http://onlinelibrary.wiley.com/doi/10.1002/jgrc.20074/epdf).

2012

• Puleo, J.A., Lanckriet, T.M. and P. Wang. 2012. Nearbed cross-shore velocity profiles, bed shear stress and friction on the foreshore of a microtidal beach, Coastal Engineering, 68, 6-16, (https://doi.org/10.1016/j.coastaleng.2012.04.007).
• Puleo, J.A., T.E. McKenna, K.T. Holland and J.C. Calantoni. 2012. Quantifying riverine surface currents from time sequences of thermal infrared images, Water Resources Research, 48, W01527, doi:10.1029/2011WR010770, (http://onlinelibrary.wiley.com/doi/10.1029/2011WR010770/epdf)

2011

• Hayden, J.T. and J.A. Puleo. 2011. Near real-time scour monitoring system: Application to Indian River Inlet, Delaware, USA, Journal of Hydraulic Engineering, 137, 1037; doi:10.1061/(ASCE)HY.1943-7900.0000399 (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%29HY.1943-7900.0000399).

2010

• Nordstrom, K.F., N.L. Jackson, K.H. Korotky and J.A. Puleo. 2010. Aeolian transport rates across raked and unraked beaches on a developed coast, Earth Surface Processes and Landforms, doi:10.1002/esp.2105 (http://onlinelibrary.wiley.com/doi/10.1002/esp.2105/epdf).
• Lindemer, C.A. N.G. Plant, J.A. Puleo and D. M. Thompson. 2010. Numerical simulation of a low-lying barrier island’s morphological response to hurricane Katrina, Coastal Engineering, 57, 985-995, (https://doi.org/10.1016/j.coastaleng.2010.06.004).
• Puleo, J.A., J.W.C. Faries, M. Davidson, and B. Hicks. 2010. A conductivity sensor for nearbed concentration profiling, Journal of Atmospheric and Oceanic Technology, 27, 397-408, (https://journals.ametsoc.org/doi/full/10.1175/2009JTECHO718.1).
• Puleo, J.A. 2010. Estimating alongshore sediment transport and the nodal point location on the Delaware-Maryland Coast, Journal of Waterway, Port, Coastal and Ocean Engineering, 136, 135, (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%29WW.1943-5460.0000034).

2009

• Puleo, J.A. 2009. Tidal variability of swash zone sediment suspension and transport, Journal of Coastal Research, 25, 937-948, (http://www.jcronline.org/doi/abs/10.2112/08-1031.1?journalCode=coas).
• He, L. and J.A. Puleo. 2009. PIV measurements of surface flows in laboratory wave basins, Journal of Flow Visualization and Image Processing, 16, 1-18, (http://www.dl.begellhouse.com/journals/52b74bd3689ab10b,5e65364e28c3edc0,12c35aa16238a658.html).
• Pearre, N.S. and J.A. Puleo. 2009. Quantifying seasonal shoreline variability at Rehoboth Beach, Delaware using automated imaging techniques. Journal of Coastal Research, 900-914, (http://www.jcronline.org/doi/abs/10.2112/08-1029.1).

2008

• Pietro, L., M.A. O’Neal and J.A. Puleo, 2008. Developing terrestrial-LIDAR-based digital elevation models to assess beach nourishment performance at Rehoboth Beach, DE, USA, Journal of Coastal Research, 24, 1555-1564, (http://www.jcronline.org/doi/abs/10.2112/07-0904.1 ).
• Puleo, J.A., L. He, N. Pearre, L. Schmied, M. O’Neal, L. Pietro and M. Fowler, 2008. A single-user sub-aerial beach profiler, Journal of Coastal Research, 24, 1080-1086, (http://www.jcronline.org/doi/abs/10.2112/06-0665.1).

2007

• Puleo, J.A., A. Farhadzadeh, and N. Kobayashi. 2007. Numerical simulation of swash zone fluid accelerations, Journal of Geophysical Research, 112, C07007, doi: 10.1029/2006JC004084, (http://onlinelibrary.wiley.com/doi/10.1029/2006JC004084/epdf).

2006

• Puleo, J.A., R.V. Johnson, T. Butt, T.N. Kooney, and K.T. Holland. 2006. The effect of bubbles on optical backscatter sensors, Marine Geology, 230, 87-97, (https://doi.org/10.1016/j.margeo.2006.04.008).
• Puleo, J.A., O. Mouraenko and D.M. Hanes. 2006. Closure: One-Dimensional Wave Bottom Boundary Layer Model Comparison: Specific Eddy Viscosity and Turbulence Closure Models. Journal of Waterway, Port, Coastal and Ocean Engineering, 132, 141-142, (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%290733-950X%282004%29130%3A6%28322%29).
• Calantoni, J.C., J.A. Puleo and K.T. Holland. 2006. Simulation of sediment motions using a discrete particle model in the inner surf and swash zones, Continental Shelf Research, 26, 610-621, (https://doi.org/10.1016/j.csr.2005.11.013).
• Masselink, G. and J.A. Puleo. 2006. Swash-zone morphodynamics, Continental Shelf Research, 26, 661-680, (https://doi.org/10.1016/j.csr.2006.01.015).
• Puleo, J.A. and T. Butt. 2006. The first international workshop on swash zone processes, Continental Shelf Research, 26, 556-560, (https://doi.org/10.1016/j.csr.2006.01.008).
• Calantoni, J.C. and J.A. Puleo. 2006. Role of pressure gradients in sheet flow of coarse sediments under sawtooth waves, Journal of Geophysical Research, Vol 111, doi:10.1029/2005JC002875, (http://onlinelibrary.wiley.com/doi/10.1029/2005JC002875/epdf).

2005

• Butt, T., P. Russell, J.A. Puleo, and G. Masselink. 2005. The application of Bagnold-type sediment transport models in the swash zone, Journal of Coastal Research, 21, 887-895, (http://www.jcronline.org/doi/abs/10.2112/04-0210.1?journalCode=coas).
• Puleo, J.A., T. Butt and N.G. Plant. 2005. Instantaneous energetics sediment transport model calibrations, Coastal Engineering, 52, 647-653, (https://doi.org/10.1016/j.coastaleng.2005.03.002).

2004

• Plant, N.G., J.A. Puleo and K.T. Holland. 2004. Prediction skill of nearshore profile evolution models, Journal of Geophysical Research, 109, C01006, 10.1029/2003JC001995, (http://onlinelibrary.wiley.com/doi/10.1029/2003JC001995/epdf).
• Puleo, J.A., O. Mouraenko and D.M. Hanes. 2004. One-dimensional wave bottom boundary layer model comparison: Specific eddy viscosity and turbulence closure models, Journal of Waterway, Port, Coastal and Ocean Engineering, 130, 322-325, (https://ascelibrary.org/doi/abs/10.1061/%28ASCE%290733-950X%282004%29130%3A6%28322%29).
• Butt, T., P. Russell, J.A. Puleo, J. Miles and G. Masselink. 2004. The influence of bore turbulence on sediment transport in the swash and inner surf zones, Continental Shelf Research, 24, 757-771, (https://doi.org/10.1016/j.csr.2004.02.002).
• Puleo, J.A., T.N. Kooney and R.V. Johnson. 2004. Laboratory air bubble generation of various size distributions, Review of Scientific Instruments, 75, 4558-4563, (https://aip.scitation.org/doi/abs/10.1063/1.1805013).

2003

• Puleo, J.A., K.T. Holland, N.G. Plant, D.N. Slinn and D.M. Hanes. 2003. Fluid acceleration effects on suspended sediment transport in the swash zone, Journal of Geophysical Research, 108, 3350, 10.1029/2003JC001943, (http://onlinelibrary.wiley.com/doi/10.1029/2003JC001943/epdf).
• Puleo, J.A., G. Farquharson, S. Frasier and K.T. Holland. 2003. Comparison of optical and radar measurements of surf and swash zone velocity fields, Journal of Geophysical Research, 108, 3100, doi:10.1029./2002JC001483, (http://onlinelibrary.wiley.com/doi/10.1029/2002JC001483/epdf).

2002

• Plant, N.G., K.T. Holland and J.A. Puleo. 2002. Analysis of the scale of errors in nearshore bathymetric data, Marine Geology, 191, 71-86, (https://doi.org/10.1016/S0025-3227(02)00497-8).

2001

• Puleo, J.A. and K.T. Holland. 2001. Estimating swash zone friction coefficients on a sandy beach, Coastal Engineering, 43(1), 25-40, (https://doi.org/10.1016/S0378-3839(01)00004-7).
• Holland K.T. and J.A. Puleo. 2001. Variable swash motions associated with foreshore profile change, Journal of Geophysical Research, 106(C3), 4613-4623, (http://onlinelibrary.wiley.com/doi/10.1029/1999JC000172/epdf).
• Holland, K.T., J.A. Puleo and T.N. Kooney. 2001. Quantification of swash flows using video-based particle image velocimetry, Coastal Engineering, 44, 65-77, (https://doi.org/10.1016/S0378-3839(01)00022-9).

2000

• Puleo, J.A., R.A. Beach, R.A. Holman, and J.S. Allen. 2000. Swash zone sediment suspension and transport and the importance of bore-generated turbulence, Journal of Geophysical Research, 105, 17021-17044, (http://onlinelibrary.wiley.com/doi/10.1029/2000JC900024/epdf).

 

2018

• Shi, F., Malej, M., Smith, J. M., and Kirby, J. T., 2018, “Breaking of ship bores in a Boussinesq-type ship-wake model”, Coastal Engineering, doi:10.1016/j.coastaleng.2017.11.002.

2017

• Kukulka, T.,Jenkins, R. L., Kirby, J. T., Shi, F. and Scarborough, R. W., 2017, “Surface wave dynamics in Delaware Bay and its adjacent coastal shelf”, Journal of Geophysical Research: Oceans, doi:10.1002/2017JC013370
• Lynett P., et al., 2017, “Inter-Model Analysis of Tsunami-Induced Coastal Currents”, Ocean Modelling, doi:10.1016/j.ocemod.2017.04.003
• Chakrabarti, A., Brandt, S. R., Chen, Q., and Shi, F., 2017, “Boussinesq modeling of wave induced hydrodynamics in coastal wetlands during Hurricane Isaac”, Journal of Geophysical Research: Oceans, DOI: 10.1002/2016JC012093
• Zhou, Z., Yu, X., Hsu, T.-J., Shi, F., Geyer, W. R. and Kirby, J. T., 2017, “Large eddy simulation of idealized river plumes at high Reynolds number”, Journal of Geophysical Research: Oceans , DOI: 10.1002/2016JC012334
• Wu, G., Li, H., Liang, B., Shi, F.,Kirby, J. T., and Mieras, R., 2017, “Subgrid Modeling of Salt Marsh Hydrodynamics with Effects of Vegetation and Vegetation Zonation”, Earth Surface Processes and Landforms, DOI:10.1002/esp.4121
• Shi, F., Chickadel, C., Hsu, T.-J., Kirby, J. T., Farquharson, G. and Ma, G., 2017, “Frontal features of the Columbia River mouth seen from a high-resolution non-hydrostatic model”, Estuarines and Coasts, 40, 296-309, DOI 10.1007/s12237-016-0132-y
• Grilli, S. T., Shelby, M., Kimmoun, O., Dupont, G., Nicolsky, D., Ma, G., Kirby, J. T. and Shi, F., 2017, “Modeling coastal tsunami hazard from submarine mass failures: effect of slide rheology, experimental validation, and case studies off the US East Coast”, Natural Hazards, doi:10.1007/s11069-016-2692-3

2016

• Kirby, J. T., Shi, F., Nicolsky, D. and Misra, S., 2016, “The 27 April 1975 Kitimat, British Columbia submarine landslide tsunami: A comparison of modeling approaches”, Landslides, 13, 1421-1434, doi:10.1007/s10346-016-0682-x.
• Schnyder, J. S. D., Eberli, G. P., Kirby, J. T., Shi, F., Tehranirad, B., Mulder, T., Ducassou, E., H ebbeln, D. and Wintersteller, P., 2016, “Tsunamis caused by submarine slope failures along western Gr eat Bahama Bank”, Scientific Reports (Nature) , 6, 35925, doi:10.1038/srep35925.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “NHWAVE: Consistent boundary conditions and turbulence modeling”, Ocean Modelling, 106, 121-130, doi: 10.1016/j.ocemod.2016.09.002.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model, Part 1: Organized wave motions”, Ocean Modeling, 107, 125-138, doi: 10.1016/j.ocemod.2016.09.001.
• Derakhti, M., Kirby, J. T., Shi, F. and Ma, G., 2016, “Wave breaking in the surf zone and deep water in a non-hydrostatic RANS model, Part 2: Turbulence and mean circulation”, Ocean Modeling, doi: 10.1016/j.ocemod.2016.09.011.
• Ma, G., Farahani, A. A., Kirby, J. T., Shi, F., 2016, Modeling wave-structure interactions by an immersed boundary method in a sigma-coordinate model, Ocean Engineering, 125, 238-247. doi:10.1016/j.oceaneng.2016.08.027.
• Son, S. Jung, T.-H., and Shi, F., 2016, “Vertical structure of rip-currents in the nearshore Circulation”, Journal of Coastal Research , Special issue, 72, 1402-1406, doi:10.2112/SI75-281.1.
• Orzech, M., Shi, F., Veeramony, J., Bateman, S., Calantoni, J. and Kirby, J. T., 2016, “Incorporating floating surface objects into a fully dispersive surface wave model”, Ocean Modelling, 102, 14-26, doi:10.1016/j.ocemod.2016.04.007.
• Wu, G., Shi, F., Kirby, J. T., Mieras, R., Liang, B., Li, H. and Shi, J., 2016, “A pre-storage, subgrid model for simulating flooding and draining processes in salt marshes”, 49 Coastal Engineering, 108, 65-78, doi:10.1016/j.coastaleng.2015.11.008.

2015

• Shi, J., Shi, F., Kirby, J. T. Gu, G. and Ma, G., 2015, “Pressure decimation and interpolation (PDI) method for a baroclinic non-hydrostatic model”, Ocean Modelling, 96, 265-279, doi:10.1016/j.ocemod.2015.09.010.
• Ma, G., Kirby, J. T., Hsu, T.-J. and Shi, F., 2015, “A two-layer granular landslide model for tsunami wave generation: Theory and computation”, Ocean Modelling, 93. 40-55, doi:10.1016/j.ocemod.2015.07.012.
• Tehranirad, B., Harris, J. C., Grilli, A. R., Grilli, S. T., Abadie, S., Kirby, J. T. and Shi, F., 2015, “Far-field tsunami hazard on the western European and US east coast from a large scale flank collapse of the Cumbre Vieja volcano, La Palma”, Pure and Applied Geophysics, doi:10.1007/s00024-015-1135-5.
• Chen, J., Hsu, T., Shi, F., Raubenbeimer, B., and Elgar, S., 2015, “Hydrodynamic and sediment transport modeling of New River Inlet (NC) under the interaction of tides and waves”, J. Geophy. Res. , doi:10.1002/2014JC010425.
• Goncharenko, Y.V., Farquharson, G., Shi, F., Raubenheimer, B., Elgar, S.,2015,”Estimation of Shallow-water Breaking Wave Height from Synthetic Aperture Radar”,Geosicence and Remote Sensing Letters, doi:10.1109/LGRS.2015.2445492.
• Shi, F., Vittori, G. and Kirby, J. T., 2015, “Concurrent correction method for modeling morphological response to dredging an offshore sandpit”, Coastal Engineering , 97,1-10, doi:10.1016/j.coastaleng.2014.12.008.
• Keshtpoor, M., Puleo, J. A., Shi, F. and Ma, G., 2015,”3D Numerical Simula tion of Turbulence and Sediment Transport within a Tidal Inlet”, Coastal Engineering, 96,13-26, doi:10.1016/j.coastaleng.2014.10.009.
• Grilli, S. T., O’Reilly, C., Harris, J. C., Tajalli Bakhsh, T., Tehra nirad, B., Banihashemi, S., Kirby, J. T., Baxter, C. D. P., Eggeling, T., Ma , G. and Shi, F., 2015 “Modeling of SMF tsunami hazard along the upper U. S. East Coast: Detailed impact around Oc ean City, MD”, Nat. Hazards, doi:10.1007/s11069-014-1522-8.

2014

• Tappin, D. R., Grilli, S. T., Harris, J. C., Geller, R. J., Masterlark, T., Kirby, J. T., Shi, F., Ma, G., Thingbaijam, K. K. S. and Mai, P. M., 2014, “Did a submarine landslide contribute to the 2011 Tohoku tsunami?”, Marine Geology, doi:10.1016/j.margeo.2014.09.043.
• Chen, J., Shi, F., Hsu, T.-J., and Kirby, J. T., 2014,”NearCoM-TVD – a quasi-3D nearshore circulation and sediment transport model”, Coastal Engineering, 91, 200-212, doi:10.1016/j.coastaleng.2014.06.002.
• Keshtpoor, M., Puleo, J. A., Shi, F. and DiCosmo, N., 2014, “Numerical simulation of nearshore hydrodynamics and sediment transport downdrift of a tidal inlet”, Journal of Waterway, Port, Coastal and Ocean Engineering, doi:10.1061/(ASCE)WW.1943-5460.0000273.
• Ma, G., Shi, F., Hsiao, S.-C., and Wu Y.-T.,2014, “Non-dydrostatic modeling of wave interaction with porous structures”, Coastal Engineering, 91, 84-98, doi:10.1016/j.coastaleng.2014.05.004.
• Hansen, J. E., Janssen, T. T., Raubenheimer, B., Shi, F., Barnard, P., and Jones, I. S., 2014, “Observations of surfzone alongshore pressure gradients onshore of an ebb-tidal delta”, Coastal Engineering, 91, pp. 251-260, doi:10.1016/j.coastaleng.2014.05.010.
• Ma, G., Chou, Y.-J. and Shi, F., 2014, “A wave-resolving model for nearshore suspended sediment transport”, Ocean Modelling, 77, 2014, 33-49, doi:10.1016/j.ocemod.2014.03.003.
• Keshtpoor, M., Puleo, J. A., Shi, F., 2014, “Downdrift beach erosion adjacent to the Indian River Inlet, Delaware, USA”, Shore & Beach, Vol. 82, No. 1-11.

2013

• Ma, G., Shi, F., Liu, S. and Qi, D., 2013,”Migration of sediment deposition due to the construction of large-scale structures in Changjiang Estuary”, Applied Ocean Research, 43, 148-156, doi:10.1016/j.apor.2013.09.002.
• Ma, G., Kirby, J. T. and Shi, F., 2013, “Numerical simulation of tsunami waves generated by deformable submarine landslides”, Ocean Modelling, 69, 146-165, doi:10.1016/j.ocemod.2013.07.001.
• Ma, G., Kirby, J T., Su, S. F., Figlus, J. and Shi, F., 2013, “Numerical study of turbulence and wave damping induced by vegetation canopies”, Coastal Engineering, 80, 68-78, doi:10.1016/j.coastaleng.2013.05.007.
• Shi, F., Cai, F., Kirby, J. T. and Zheng, J., 2013, “Morphological modeling of a nourished bayside beach with a low tide terrace”, Coastal Engineering, 78, 23-34, doi:10.1016/j.coastaleng.2013.03.005.
• Sawyer, A. H., Shi, F., Kirby, J. T. and Michael, H. A., 2013, “Dynamic response of surface water-groundwater exchange to currents, tides and waves in a shallow estuary’‘, J. Geophys. Res., 118, doi:10.1002/jgrc.20154.
• Kirby, J. T., Shi, F. Harris, J. C., and Grilli, S. T., 2013, “Dispersive tsunami waves in the ocean: Model equations and sensitivity to dispersion and Coriolis effects”, Ocean Modeling , 62, 39-55, doi:10.1016/j.ocemod.2012.11.009.

2012

• Grilli, S. T., Harris, J. C., Tajalibakhsh, T., Masterlark, T. L., Kyriakopoulus, C., Kirby, J. T. and Shi, F., 2012, “Numerical simulation of the 2011 Tohoku tsunami based on a new transient FEM co-seismic source”, Pure and Applied Geophysics, doi:10.1007/s00024-012-0528-y.
• Shi, F., Kirby, J. T., Harris, J. C., Geiman, J. D. and Grilli, S. T., 2012, “A high-order adaptive time-stepping TVD solver for Boussinesq modeling of breaking waves and coastal inundation”, Ocean Modelling, 43-44, 36-51, doi:10.1016/j.ocemod.2011.12.004.
• Ma, G., Shi, F. and Kirby, J. T., 2012, “Shock-capturing non-hydrostatic model for fully dispersive surface wave processes”, Ocean Modelling, 43-44, 22-35, doi:10.1016/j.ocemod.2011.12.002.

2011

• Shi., F., Hanes, D. M., Kirby, J. T., and Erikson, L., Barnard, P., and Eshleman, J., 2011, Pressure gradient-driven nearshore circulation on a beach influenced by an adjacent large inlet , J. Geophys. Res., doi:10.1029/2010JC006788.
• Ma, G., Shi, F., and Kirby, J. T., 2011, A polydisperse two-fluid model for surfzone bubble simulation, J. Geophys. Res. , doi:10.1029/2010JC006667.
• Ma, G., Shi, F., Qi, D., and Liu, S., 2011, Hydrodynamic modeling of Changjiang Estuary: model skill assessment and large-scale structure impacts, Applied Ocean Research , 33, 69-78, doi:10.1016/j.apor.2010.10.004.

2010

• Shi, F., Kirby, J. T., and Ma, G., 2010, Modeling quisecent phase transport of air bubbles induced by breaking waves, Ocean Modelling , 35, 105-117, doi:10.1016/j.ocemod.2010.07.002.
• Grilli,S.T., Dubosq, S., Pophet,N. Perignon, Y. Kirby, J. T., and Shi, F., 2010, Numerical simulation of co-seismic tsunami impact on the North shore of Puerto Rico and far-field impact on the US east coast: a first-order hazard analysis, Natural Hazards and Earth System Sciences, 10, 2109-2125, doi:10.5194/nhess-10-2109-2010.
• Qi, H., Cai, F., Lei, G., Cao, H., and Shi, F., 2010, The response of three main beach types to tropical storms in South China, Marine Geology, 275, 244 – 254, doi:10.1016/j.margeo.2010.06.005.
• Zhang, W., Shi, F., Hong, H., Shang, S. and Kirby, J. T., 2010, Tide-surge interaction intensified by the Taiwan Strait, J. Geophys. Res., 115, C06012,doi:10.1029/2009JC005762.

2009

• Waythomas C.F., Watts P., Shi F., and Kirby J. T., 2009, Pacific basin tsunami hazards associated with mass flows in the Aleutian Arc of Alaska, Quaternary Science Review, 28, 11-12, 1006 – 1019, doi:10.1016/j.quascirev.2009.02.019.

2008

• Smith K. A., North E. W., Shi F. Chen S-N, Sanford L., Hood R. R., Koch E. W. and Newell R. I. E., 2008, Modeling the effects of oyster reefs and breakwaters on seagrass beds, Estuaries and Caosts, 32 (4), 748-757, www.jstor.org/stable/40663579.
• Shi, F. and Kirby, J. T., 2008, Discussion of ‘Wave setup and setdown generated by obliquely incident waves’ by T.-W. Hsu et al, Coastal Engrng, 53, 865-877, 2006’, Coastal Engrng., 55, 1247-1249, doi:10.1016/j.coastaleng.2008.08.001.

2007

• Shi, F., Kirby, J. T., Hanes, D., 2007, An efficient mode-splitting method for a curvilinear nearshore circulation model, Coastal Engineering, , 54, 811-824, doi:10.1016/j.coastaleng.2007.05.009.
• Chen S-N, Sanford, L. P., Koch, E. W., Shi, F., North, E. W., 2007, A nearshore model to investigate the effects of seagrass bed geometry on wave attenuation and suspended sediment transport, Estuaries and Coasts, Vol. 30, No.2, 296-310, www.jstor.org/stable/4494087.
• Grilli, S. T., Ioualalen, M., Asavanant, J., Shi, F., Kirby, J. T., Watts, P., 2007, Source constraints and model simulation of the December 26, 2004, Indian Ocean Tsunami, Journal of Waterway, Port, Coastal and Ocean Engineering, Special Issue on Tsunami Engineering, Vol. 133, No.6, 414-428, doi:10.1061/(ASCE)0733-950X(2007)133:6(414).

2005

• Shi, F. and Kirby, J. T.,2005, Curvilinear parabolic approximation for surface wave transformation with wave-current interaction, Journal of Computational Physics , 204, 562-586, doi:10.1016/j.jcp.2004.10.022.

2004

• Zheng, Q, Yuan, Y., Shen, S.S., Huang, N. E., Klemas, V., Yan, X., Shi, F., Zhang, X., Zhao, Z., Li, X., and Clemente-Colon, P., 2004, Evidence of upstream solitons and downstream wavetrain in a near resonant air flow over an island topography , International Journal of Remote Sensing , 25 (21), 4433- 4440,doi:10.1080/01431160310001609716.
• Kong, Y., Shi, F., and Ding P., 2004, A statistical model for predicting storm-induced sediment deposition in North-Channel at Yangtze River Mouth, Journal of ECNU (Nature Science, in Chinese), 2004 (1), 25-34.

2003

• Chen, Q., Kirby, J. T., Dalrymple, R. A., Shi, F. and Thornton, E. B., 2003, Boussinesq modeling of longshore currents, J. Geophys. Res., Vol. 108, No. C11, 3362, doi:10.1029/2002JC001308.
• Shi,F.,Svendsen,I.A., Kirby, J.T., and Smith, J. M., 2003, A curvilinear version of a Quasi-3D nearshore circulation model, Coastal Engineering, 49 (1-2), 99-124, doi:10.1016/S0378-3839(03)00049-8.
• Shi, F., Kirby, J. T., Dalrymple, R. A., and Chen Q., 2003, Wave simulations in Ponce De Leon Inlet using Boussinesq model, Journal of Waterway, Port, Coastal and Ocean Engineering, 129(3), 124-135, doi:10.1061/(ASCE)0733-950X(2003)129:3(124).

2001

• Shi, F., Dalrymple R. A., Kirby, J. T., Chen, Q. and Kennedy, A., 2001, A fully nonlinear Boussinesq Model in generalized curvilinear coordinates, Coastal Engineering , 42(4), 237-258, doi:10.1016/S0378-3839(00)00067-3.

2000

• Shi, F., Zhu, S., Zhu, J. and Ding, P., 2000, Numerical study on residual current and its effect on mass transport in the Hangzhou Bay and the Yangtze Estuary, I. A 3-D joint model of the Hangzhou Bay and the Yangtze Estuary, ACTA Oceanologica Sinica, 22(5): 1-12.
• Zhu S., Ding, P., Shi, F. and Zhu, J., 2000, Numerical study on residual current and its effect on mass transport in the Hangzhou Bay and the Yangtze Estuary, II. Residual current and mass transport in winter, ACTA Oceanologica Sinica, 22(6): 1-11.

1999

• Shi, F., Ding, P. and Kong, Y., 1999, A numerical fluid dynamic model using fine boundary-fitted grids in estuarine and tidal flats, China Ocean Engineering 13(2), 115-124, https://link.springer.com/journal/13344.
• Bao X., Sun, W. and Shi, F., 1999, A three-dimensional coastal barotropic model in generalized curvilinear grid, Chinese Journal of Oceanology and Limnology 17, 289-299, https://link.springer.com/article/10.1007%2FBF02842822.
• Ding, P., Shi, F. and Kong, Y., 1999, A three-dimensional diffusion equation of suspended sediment with waves and currents, Chinese Science Bulletin, 44(19), 1814-1817, https://link.springer.com/article/10.1007/BF02886167.
• Yu, Z., Zhang, J., Shi, F., and Wu, C., 1999, New method for evaluating toxicity of heavy metals on marine macroalgae, Oceanologia et Limnologia Sinica , 30 (2), 199-205.

1998

• Shi, F., Sun, W. and Wei, G., 1998, A WDM method on generalized curvilinear grid for calculation of storm surge flooding, Applied Ocean Research, 19(4), 275-282, doi:10.1016/S0141-1187(97)00030-8.
• Shi, F., Ding, P. and Kong, Y., 1998, An implicit numerical model using contravariant velocity components and calculations in a harbour-channel area, ACTA Oceanologica Sinica, 17(4), 423-432.
• Ding, P., Kong, Y. and Shi, F., 1998, Radiation stress of water waves and its calculation, Journal of ECNU (Natural Science), 1998(1), 82-87.
• Ding, P., Shi, F. and Kong, Y., 1998, Numerical calculation of Combined refraction-diffraction of random waves in non-uniform currents,Journal of ECNU (Natural Science), 1998(2), 69-76。

1997

• Shi, F., Sun, W. and Wei, G., 1997, A self-adaptive grid model for the simulation of moving lateral boundaries in problems involving the shallow water equations, ACTA Oceanologica Sinica, 19 (2), 1-9.
• Shi, F. and Sun, W., 1997, Hopscotch method in the numerical forecasting of storm surges, Journal of Ocean University of Qingdao, 27(3), 271-276.
• Xu, Z., Shi, F., Lou, S. and Shen, S.S., 1997, Velocities of precursor soliton generation of single-layer flow, Chin. J. Oceanol. Linmol, 15(2), 129-136, https://link.springer.com/article/10.1007/BF02850682.
• Xu, Z., Shi, F. and Shen, S.S., 1997, On period and amplitude of the locally forced soliton generation of single-layer flow, Progress in Nature Science, 7 (5), 574-582, https://www.tandfonline.com/loi/tpns20

1996

• Shi, F. and Zheng, L., 1996, A BFG model for calculation of tidal current and diffusion of pollutants in nearshore areas, ACTA Oceanologica Sinica, 15 (2), 283-296, http://www.hyxb.org.cn/aosen/ch/reader/19960301.
• Xu, Z., Shi, F., Lou S. and Shen S.S., 1996, Theoretical mean wave resistance of precursor soliton generation of single-layer flow, Chin. J. Oceanol. Linmol, 14(4), 330-336, https://link.springer.com/article/10.1007/BF02850553.
• Xu, Z., Xu Y. and Tian J., Shi, F., 1996, On the theoretical mean wave resistance of precursor soliton generation II. Numerical calculation,Journal of Ocean University of Qingdao, 26 (2), 139-146.

1995

• Shi, F. and Sun, W., 1995, Development and application of a moving boundary model in a polar coordinate transformation, Oceanol. Limnol. Sinica, 26 (4), 369-376.
• Shi, F. and Sun, W., 1995, A variable boundary model of storm surge flooding in generalized curvilinear grids, International Journal for Numerical Methods in Fluids, 21 (8), 642-651, doi:10.1002/fld.1650210803.

1994

• Sun, W., Yang, Z. and Shi, F., 1994, On the numerical prediction models of storm surge inundation, Journal of Ocean University of Qingdao, 24 (3), 293-300.
• Xu, Z., Shi, F. and Shen, S.S., 1994, A numerical calculation of forced supercritical soliton in a single-layer flow, Journal of Ocean University of Qingdao, 24 (3), 309-319.

1993

• Shi, F. and Sun, W., 1993, Numerical simulations of storm surge inundations in partial areas of the Bohai Sea, Oceanol. Limnol. Sinica, 24 (1), 16-23.